Lecture Notes
| August 30, 2016 | Storrs | Introduction to BME5800, Course Concept | Simon |
| Basics | |||
| September 6, 2016 | Storrs | Problems and Solutions, Complexity | Simon |
| Simulated Annealing | Simon | ||
| Graphs, Hashing, Strings | Simon | ||
| Sequence, Primary Structure | |||
| September 13, 2016 | UConn Health | Cloning, DNA Amplification | Gunzl |
| Short Reads, Fragment Assembly | Duff | ||
| September 20, 2016 | Storrs | Alignment | Simon |
| BLAST, FastA | Simon | ||
| September 27, 2016 | No Class | ||
| October 4, 2016 | Storrs | Joint Probability, Conditional Probability, Markov Assumption, Entropy | Simon |
| Expectation-Maximization | Simon | ||
| Hidden Markov Models for Gene-finding | Simon | ||
| October 11, 2016 | Storrs | Gene-finding with ANNs | Rajasekeran |
| October 18, 2016 | Storrs | Expectation Maximization, Motif Elicitation | Simon |
| October 25, 2016 | UConn Health | Linear Algebra, Molecular Evolution, Stationarity | Simon |
| November 1, 2016 | UConn Health | Molecular Divergence | Simon |
| Phylogeny | Simon | ||
| Secondary and Tertiary Structure | |||
| November 8, 2016 | UConn Health | Clustering | Simon |
| Principal Component Analysis | Simon | ||
| November 15, 2016 | UConn Health | Fourier Transformation | Simon |
| X-Ray Crystallography | Hao | ||
| DALI | Maciekewski | ||
| November 22, 2016 | No Class | Thanksgiving Break | |
| November 29, 2016 | UConn Health | NMR Review | Maciekewski |
| Normal Mode Analysis | Schuyler | ||
| December 6, 2016 | UConn Health | Student Project Presentation | All |
| Monte Carlo Model of Stochastic Gene Expression in Bacteria | Peter Larson, Victor Wang |