Lecture Notes
August 30, 2016 | Storrs | Introduction to BME5800, Course Concept | Simon |
Basics | |||
September 6, 2016 | Storrs | Problems and Solutions, Complexity | Simon |
Simulated Annealing | Simon | ||
Graphs, Hashing, Strings | Simon | ||
Sequence, Primary Structure | |||
September 13, 2016 | UConn Health | Cloning, DNA Amplification | Gunzl |
Short Reads, Fragment Assembly | Duff | ||
September 20, 2016 | Storrs | Alignment | Simon |
BLAST, FastA | Simon | ||
September 27, 2016 | No Class | ||
October 4, 2016 | Storrs | Joint Probability, Conditional Probability, Markov Assumption, Entropy | Simon |
Expectation-Maximization | Simon | ||
Hidden Markov Models for Gene-finding | Simon | ||
October 11, 2016 | Storrs | Gene-finding with ANNs | Rajasekeran |
October 18, 2016 | Storrs | Expectation Maximization, Motif Elicitation | Simon |
October 25, 2016 | UConn Health | Linear Algebra, Molecular Evolution, Stationarity | Simon |
November 1, 2016 | UConn Health | Molecular Divergence | Simon |
Phylogeny | Simon | ||
Secondary and Tertiary Structure | |||
November 8, 2016 | UConn Health | Clustering | Simon |
Principal Component Analysis | Simon | ||
November 15, 2016 | UConn Health | Fourier Transformation | Simon |
X-Ray Crystallography | Hao | ||
DALI | Maciekewski | ||
November 22, 2016 | No Class | Thanksgiving Break | |
November 29, 2016 | UConn Health | NMR Review | Maciekewski |
Normal Mode Analysis | Schuyler | ||
December 6, 2016 | UConn Health | Student Project Presentation | All |
Monte Carlo Model of Stochastic Gene Expression in Bacteria | Peter Larson, Victor Wang |