| August 30, 2016 |
Storrs |
Introduction to BME5800, Course Concept |
Simon |
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Basics |
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| September 6, 2016 |
Storrs |
Problems and Solutions, Complexity |
Simon |
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Simulated Annealing |
Simon |
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Graphs, Hashing, Strings |
Simon |
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Sequence, Primary Structure |
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| September 13, 2016 |
UConn Health |
Cloning, DNA Amplification |
Gunzl |
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Short Reads, Fragment Assembly |
Duff |
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| September 20, 2016 |
Storrs |
Alignment |
Simon |
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BLAST, FastA |
Simon |
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| September 27, 2016 |
No Class |
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| October 4, 2016 |
Storrs |
Joint Probability, Conditional Probability, Markov Assumption, Entropy |
Simon |
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Expectation-Maximization |
Simon |
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Hidden Markov Models for Gene-finding |
Simon |
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| October 11, 2016 |
Storrs |
Gene-finding with ANNs |
Rajasekeran |
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| October 18, 2016 |
Storrs |
Expectation Maximization, Motif Elicitation |
Simon |
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| October 25, 2016 |
UConn Health |
Linear Algebra, Molecular Evolution, Stationarity |
Simon |
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| November 1, 2016 |
UConn Health |
Molecular Divergence |
Simon |
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Phylogeny |
Simon |
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Secondary and Tertiary Structure |
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| November 8, 2016 |
UConn Health |
Clustering |
Simon |
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Principal Component Analysis |
Simon |
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| November 15, 2016 |
UConn Health |
Fourier Transformation |
Simon |
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X-Ray Crystallography |
Hao |
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DALI |
Maciekewski |
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| November 22, 2016 |
No Class |
Thanksgiving Break |
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| November 29, 2016 |
UConn Health |
NMR Review |
Maciekewski |
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Normal Mode Analysis |
Schuyler |
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| December 6, 2016 |
UConn Health |
Student Project Presentation |
All |
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Monte Carlo Model of Stochastic Gene Expression in Bacteria |
Peter Larson, Victor Wang |