Spectrum Translator

Spectrum Translator Assumptions

Spectrum Translator Configuration

Spectrum Translator Quickstart 

Introduction

The Connjur Spectrum Translator (ST) can be run from the command line with a minimum of four arguments. For example, to convert from a Varian spectrum in the directory nhsqc5 to a NMRPipe formatted file named nhsqc.pip, utilize the following command:

ConnjurST --srctype varian --srcdir nhsqc5 --desttype nmrpipe --destfile nhsqc.pip

Basic arguments

The basic arguments are:

  • Source type (--srctype or -st): the source format of the data to be converted. Options include bruker, nmrpipe, rowland or varian.
  • Source directory (--srcdir or -sd): the source of the data. Directories are specified for the Varian and Bruker data formats.
  • Source file (--srcfile or -sf): the source of the data. Files are specified for the NMRPipe and Rowland Toolkit data formats
  • Destination type (--desttype or -dt): the destination format of the data to be converted. Options include bruker, nmrpipe, rowland, tabular or varian.
  • Destination directory (--destdir or -dd): the destination of the data. Directories are specified for the Varian and Bruker data formats.
  • Destination file (--destfile or -df): the destination of the data. Files are specified for the NMRPipe, Rowland Toolkit and tabular data formats
  • Schedule file (--schedulein or -scd): schedule file name. Implies non-uniform sample.

Additional Examples

Converting from Rowland Toolkit to Bruker, use the shorter form of the arguments

ConnjurST -st rowland -sf myprotein.sec -dt bruker -dd prot_bruker

The arguments may be given in any order.

ConnjurST -st rowland -dt bruker -sf myprotein.sec -dd prot_bruker

is the same command as above.