Lecture Notes
| January 24, 2019 | UConn Health | Introduction to Bioinformatics and Computational Molecular Biology | Simon |
| Basics | |||
| Problems and Solutions | Simon | ||
| January 31, 2019 | UConn Health | Simulated Annealing | Simon |
| Graphs, Hashing, Strings | Simon | ||
| Sequence, Primary Structure | |||
| February 7, 2019 | UConn Health | Cloning, DNA Amplification | Gunzl |
| Short Reads, Fragment Assembly | Simon | ||
| February 14, 2019 | UConn Health | Alignment | Simon |
| BLAST | Simon | ||
| February 21, 2019 | UConn Health | BLAST Cont., FAST A | Simon |
| February 28, 2019 | UConn Health | NMR | Maciejewski |
| Normal Mode Analysis | Schuyler | ||
| March 7, 2019 | UConn Health | Joint Probability, Conditional Probability, Markov Assumption, Entropy | Simon |
| Expectation-Maximization | Simon | ||
| Hidden Markov Models for Gene-finding | Simon | ||
| March 14, 2019 | UConn Health | Expectation Maximization, Motif Elicitation | Simon |
| Fourier Transformation |
Simon | ||
| March 21, 2019 | No Class | Spring Break (March 17 - 23) | |
| March 28, 2019 | UConn Health | Brief Intro to Linear Algebra, Molecular Evolution, Stationarity | Simon |
| April 4, 2019 | UConn Health | Molecular Divergence | Simon |
| Phylogeny | Simon | ||
| Secondary and Tertiary Structure | |||
| April 11, 2019 | UConn Health | Clustering | Simon |
| Principal Component Analysis | Simon | ||
| April 18, 2019 | UConn Health | DALI | Maciejewski |
| X-Ray Crystallography | Hao | ||
| April 25, 2019 | UConn Health | TBA | TBA |
| May 2, 2019 | UConn Health | Student Project Presentation | All |