Publications

Publications

2025

MACanalyzeR scRNAseq analysis tool reveals PPARγHIGH/GDF15HIGH lipid-associated macrophages facilitate thermogenic expansion in BAT.

Ninni A, Zaccaria F, Verteramo L, Sciarretta F, Silveira LS, Rosa-Neto JC, Carotti S, Nevi L, Grumati P, Patel S, Carrera G, Sgambato A, Lucchetti D, Colella F, Severi I, Senzacqua M, Giordano A, Bernardini S, Di Biagio C, Tortolici F, Rizzo G, Cochain C, Chiurchiù V, Ivanov S, Zhou B, Williams JW, Savage DB, Aquilano K, Lettieri-Barbato D.Nat Commun. 2025 May 31;16(1):5063. doi: 10.1038/s41467-025-60295-2.PMID: 40450001 Free PMC article.
 

Soluble Immune Checkpoint Protein and Lipid Network Associations with All-Cause Mortality Risk: Trans-Omics for Precision Medicine (TOPMed) Program.

Rodriguez A, Yang C, Gan W, Karlinsey K, Zhou B, Rich SS, Taylor KD, Guo X, Rotter JI, Johnson WC, Cornell E, Tracy RP, Durda JP, Gerszten RE, Clish CB, Blackwell T, Papanicolaou GJ, Lin H, Raffield LM, Vargas JD, Vasan R, Manichaikul A.medRxiv [Preprint]. 2025 Jan 9:2025.01.08.25320225. doi: 10.1101/2025.01.08.25320225.PMID: 39830278 Free PMC article. Preprint.

2024

Lipid-associated macrophages reshape BAT cell identity in obesity.

Sciarretta F, Ninni A, Zaccaria F, Chiurchiù V, Bertola A, Karlinsey K, Jia W, Ceci V, Di Biagio C, Xu Z, Gaudioso F, Tortolici F, Tiberi M, Zhang J, Carotti S, Boudina S, Grumati P, Zhou B, Brestoff JR, Ivanov S, Aquilano K, Lettieri-Barbato D.Cell Rep. 2024 Jul 23;43(7):114447. doi: 10.1016/j.celrep.2024.114447. Epub 2024 Jul 3.PMID: 38963761 Free PMC article.

2023

2022

2021

2020

2019

2018

2017

2016

2015

  • MicroRNA-223 is a crucial mediator of PPARγ-regulated alternative macrophage activation.
    Ying, Wei; Tseng, Alexander; Chang, Richard Cheng-An; Morin, Andrew; Brehm, Tyler; Triff, Karen; Nair, Vijayalekshmi; Zhuang, Guoqing; Song, Hui; Kanameni, Srikanth; Wang, Haiqing; Golding, Michael C; Bazer, Fuller W; Chapkin, Robert S; Safe, Stephen; Zhou, Beiyan The Journal of clinical investigation 2015 Nov;125(11):4149-59
  • High-Fat Diet-Induced Retinal Dysfunction.
    Chang, Richard Cheng-An; Shi, Liheng; Huang, Cathy Chia-Yu; Kim, Andy Jeesu; Ko, Michael L; Zhou, Beiyan; Ko, Gladys Y-P Investigative ophthalmology & visual science 2015 Apr;56(4):2367-80
  • The many faces of interferon tau.
    Bazer, Fuller W; Ying, Wei; Wang, Xiaoqiu; Dunlap, Kathrin A; Zhou, Beiyan; Johnson, Greg A; Wu, Guoyao Amino acids 2015 Mar;47(3):449-60
  • NR4A Orphan Receptors as Drug Targets
    Stephen Safe, Syng-Ook Lee, Cong Meng, Beiyan Zhou Targeted Therapy of Acute Myeloid Leukemia 2015 Jan;
  • MicroRNA-regulated immune cell function in obese adipose tissue
    Wei Ying, Chuan Li, Anthony T Vella, Beiyan Zhou Handbook of Nutrition, Diet, and Epigenetics

pre-2015